This is near the end of the game, after solving the TV puzzle and flying through a series of moving pumps in a few hallways.
You'll see some wind blowing left in the room, while some stairs/pumps are moving up and down below. There is three red switches to the left, DO NOT TOUCH THESE. You need to fly through without messing around with the switches. Just place yourself just below the wind, take a flying start and try and time it so you hit the pumps just as they move down. As soon as you're through, the trophy will pop.